Wei Yee W.

I hold a first degree and Ph.D in bioinformatics field. As an accomplished bioinformaticist with over many years of experience in the field of bioinformatics research. I have a proven record in publication and published 31 high impact papers. I have great skills in a variety of bioinformatics analysis such as transcriptome, single cell RNA, whole genome, exon, metagenomics, GWAS and bacterial genome analysis. I am also able to create a pipeline with the programming language like Python, Perl and R. I also have high performance workstation and server to run the Bioinformatic analysis. I am also familiar with Mathematic and statistic analysis as I am currently also a Mathematic and statistic lecturer at University level. Math topics like algebra, calculus, probability and trigonometry are the usual topic I teach in University. I also have experience in using Statistic software like SPSS, Excel, Python and R. I also know about Machine learning topics such as (clustering, SVM and other algorithms) Below is the list of the Bioinformatic analysis I am familiar with: • Next-generation sequencing analysis (RNA-seq, Whole-genome sequencing and Exome sequencing) • Bacterial genome analysis • Genome assembly and annotation • Metagenomics analysis • Comparative genomic analysis • Comparative pathogenomics analysis • Phylogenetic analysis • Pan-genome analysis • Transmission network analysis • Familiar with few programming languages such as Perl, Python, Java • Capable to develop a bioinformatics pipeline • Differential gene expression analysis • GWAS • SNP variant analysis • ANI, AAI and GGDC analysis Familiar Statistics Software: • SPSS • R (Rstudio) • Python (Jupyter notebook) • Excel Familiar Bioinformatics Software: Genome assembly softwares: • CLC Genomics Workbench • SPAdes Genome Assembler • Assembly By Short Sequences (ABySS) • Velvet assembler • SOAPdenovo • SSPACE • MaSuRCA • Unicycler Genome mapping, alignment and processing tools: • Bowtie/Bowtie2 • Burrows-Wheeler Aligner (BWA) • MUMmer (NUCmer and PROmer) • SAMtools • BAMtools • Picard tools • ClustalW • BLAST • HISAT2 Genome annotation software: • Rapid Annotation using Subsystem Technology (RAST) • DAVID Functional Annotation • GeneMark • Blast2GO Metagenomics analysis tools: • MEtaGenome ANalyzer (MEGAN5) • DIAMOND • QIIME2 QIIME2R Phylogenetic tree analysis tools: • Molecular Evolutionary Genetics Analysis (MEGA) • Fasttree RNA-sequencing: • Cufflinks • Trinity • EdgeR • DESeq2 Single Cell - RNA analysis • Seurat Exome-sequencing: • ANNOVAR • SnpEff and SnpSift • GATK Other genomic analysis tools: • Pan-Genome Analysis Pipeline (PGAP) • PGAweb • IslandViewer • PHAge Search Tools (PHAST) • BadiRate • Circos • DNAPlotter